[kevshaw@451]$ history
     1  cd seqwf
     2  wget ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR447/007/ERR4470507/ERR4470507.fastq.gz
     3  gzip -dv ERR4470507.fastq.gz
     4  less ERR4470507.fastq
     5  wget https://yea4.us/451/data/rat.tar.gz
     6  tar xzvf rat.tar.gz
     7  ls -l
     8  nano align_script
     9  ls al*
    10  chmod +x align_quick
    11  ls al*
    12  ls -l al*
    13  nohup ./align_quick rat.fa ERR4470507.fastq &
    14  top
    15  ls
    16  ls -l snps*
    17  gzip -dv snps.vcf.gz
    18  less snps.vcf
    19  grep INDEL snps.vcf
    20  grep 'INDEL;' snps.vcf
    21  grep 'INDEL' snps.vcf
    22  grep 'INDEL' snps.vcf | wc -l
    23  less snps.vcf
    24  grep 'INDEL;' snps.vcf | wc -l
    25  grep DP= snps.vcf
    26  grep ' DP=' snps.vcf
    27  grep ' DP=' snps.vcf
    28  egrep 'DP=' snps.vcf
    29  egrep ' DP=' snps.vcf
    30  less align_script
    31  cd
[kevshaw@451]$