Tuesday, 3 December, 2024
[kevshaw@451]$ history
1 wget https://yea4.us/451/data/myog-sea.gz
2 gzip -dv myog-sea.gz
3 clustalw
4 less myog-sea.dnd
5 drawtree
6 ln -s intree myog-sea.dnd
7 ln -s myog-sea.dnd intree
8 ls
9 ls -la
10 ls -l
11 drawtree
12 convert plotfile tree.jpg
13 mkdir seqwf
14 ls
15 cd seqwf/
16 ls
17 ls -al
18 less ..
19 wget wget http://ftp.ensembl.org/pub/current_fasta/saccharomyces_cerevisiae/dna/Saccharomyces_cerevisiae.R64-1-1.dna_sm.toplevel.fa.gz
20 wget https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR507/SRR507778/SRR507778_1.fastq.gz
21 tracert https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR507/SRR507778/SRR507778_1.fastq.gz
22 traceroute https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR507/SRR507778/SRR507778_1.fastq.gz
23 traceroute https://sra.ebi.ac.uk/
24 traceroute https://www.sra.ebi.ac.uk
25 traceroute www.microsoft.com
26 traceroute www.sra.ebi.ac.uk
27 traceroute sra.ebi.ac.uk
28 wget https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR507/SRR507778/SRR507778_2.fastq.gz
29 ls
30 gzip -dv *.gz
31 head -20000 SRR507778_1.fastq > 1.fastq
32 head -20000 SRR507778_2.fastq > 2.fastq
33 nano align_script
34 chmod x align_script
35 ls
36 nano play
37 chomd x play
38 chmod x play
39 ./play
40 nano play
41 ./play
42 date
43 ./play
44 nano play
45 ./play
46 nano play
47 ./play
48 nano align_script
49 ./align_script Saccharomyces_cerevisiae.R64-1-1.dna_sm.toplevel.fa 1.fastq 2.fastq
50 ls
51 less snps.vcf.gz
52 cat align_script
53 ls
54 cat play
55 nano play
56 ./align_script Saccharomyces_cerevisiae.R64-1-1.dna_sm.toplevel.fa 1.fastq 2.fastq
57 ls
58 cd
[kevshaw@451]$