Tuesday, 14 November, 2023
[kevshaw@451]$ history
1 date
2 top
3 ls
4 mk ps7
5 mkdir ps7
6 cd ps7
7 wget https://yea4.us/451/ps/ps07/3l3n.tar.gz
8 tar zxvf 3l3n.tar.gz
9 ls
10 wget https://yea4.us/451/ps/ps07/007.tar.gz
11 tar zxxvf 007.tar.gz
12 wget https://yea4.us/451/ps/ps07/peptides.tar.gz
13 tar xzvf peptides.tar.gz
14 ls
15 ls *.gz
16 rm *.gz
17 ls *.gz
18 rm -rf 0000*
19 ls
20 rm -rf 00010*
21 ls
22 wget https://yea4.us/451/ps/ps07/pscrp.gz
23 gzip -dv pscrp.gz
24 ls
25 chomd x pscrp
26 chmod x pscrp
27 ./pscrp
28 ./pscrp | xargs -l -P 2 vina
29 ls
30 less 3l3n.pdbqt
31 ls 000143018053/
32 less 000143018053/out.pdbqt
33 grep ^ATOM 000143018053/out.pdbqt
34 grep ^ATOM 000143018053/out.pdbqt | less
35 grep ^ATOM 000143018053/out.pdbqt | head -15
36 cat 3l3n.pdbqt > posed.pdb; grep ^ATOM 000143018053/out.pdbqt | head -15 >> posed.pdb
37 less posed.pdb
38 molauto posed.pdb | molsort
39 molauto posed.pdb | molsort > pose.ms
40 nano pose.ms
41 molscript < pose.ms > pose.ps
42 convert pose.ps pose.jpg
43 cal
44 cd
45 ls
46 cd blast/
47 ls
48 wget https://yea4.us/451/data/pancetta
49 ls
50 cat pancetta
51 blastp -db pdbaa -query pancetta
52 blastp -db pdbaa -query pancetta | more
[kevshaw@451]$