[kevshaw@451]$ history
     1  date
     2  ls
     3  cat hello.c
     4  cat hello.c | wc -l
     5  cat hello.c | wc
     6  cd seq
     7  ls
     8  cd ..
     9  cd dnaseq/
    10  ls
    11  samtools view yeast.bam | less
    12  less yeast.bam
    13  samtools view yeast.bam | less
    14  samtools view -T yeast.fa -C -o yeast.cram yeast.bam
    15  less yeast.cram
    16  samtools mpileup -f yeast.fa yeast.cram | less
    17  bcftools mpileup -Ou -f yeast.fa yeast.bam | bcftools call -vmO z -o snps.vcf.gz
    18  ls
    19  gzip -dv snps.vcf.gz
    20  ls
    21  less snps.vcf
    22  grep ^[IVXM] snps.vcf
    23  grep ^[IVXM] snps.vcf | less
    24  grep ^[IVXM] snps.vcf | wc -l
    25  grep ^[IVXM] snps.vcf | less
    26  grep ^[IVXM] snps.vcf | grep INDEL
    27  grep ^[IVXM] snps.vcf | grep INDEL | wc -l
    28  grep ^[^#] snps.vcf
    29  grep ^[^#] snps.vcf | less
    30  grep ^[IVXM] snps.vcf | less
[kevshaw@451]$