Thursday, 18 November, 2021
[kevshaw@451]$ history
1 ls
2 mkdir seq
3 cd seq
4 ls
5 wget ftp://ftp.ensembl.org/pub/current_fasta/saccharomyces_cerevisiae/dna/Saccharomyces_cerevisiae.R64-1-1.dna_sm.toplevel.fa.gz
6 ls
7 gzip -dv Saccharomyces_cerevisiae.R64-1-1.dna_sm.toplevel.fa.gz
8 ls
9 ls -l
10 mv Saccharomyces_cerevisiae.R64-1-1.dna_sm.toplevel.fa yeast.fa
11 ls
12 less yeast.fa
13 grep > yeast.fa
14 grep '>' yeast.fa
15 head -1 yeast.fa
16 ls -l
17 wget ftp://ftp.ensembl.org/pub/current_fasta/saccharomyces_cerevisiae/dna/Saccharomyces_cerevisiae.R64-1-1.dna_sm.toplevel.fa.gz
18 gzip -dv Saccharomyces_cerevisiae.R64-1-1.dna_sm.toplevel.fa.gz
19 gzip -dv Saccharomyces_cerevisiae.R64-1-1.dna_sm.toplevel.fa.gz ls
20 ls
21 mv Saccharomyces_cerevisiae.R64-1-1.dna_sm.toplevel.fa yeast.fa
22 ls
23 ls -l
24 grep '>' yeast.fa
25 ls
26 samtools faidx yeast.fa
27 ls
28 less yeast.fa
29 less yeast.fa.fai
30 bwa index yeast.fa
31 ls
32 less yeast.fa.bwt
33 wget http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR507/SRR507778/SRR507778_1.fastq.gz
34 cd
35 .holidaze/chanukah
36 .holidaze/chanukah 100
[kevshaw@451]$