[kevshaw@451]$ history
     1  ls
     2  wget https://yea4.us/451/data/ex5
     3  cat ex5
     4  blastp -db pdbaa -query ex5 | less
     5  cd /u/blastdb/
     6  ls
     7  ls pdbaa
     8  ls pdbaa*
     9  ls -l pdbaa*
    10  less pdbaa.00.phr
    11  less pdbaa.00.psq
    12  less pdbaa.00.psd
    13  ls
    14  ls nr*
    15  ls -l nr*
    16  ls
    17  cd
    18  blastp -db pdbaa -query ex5 -outfmt 11 -out ex5.out
    19  less ex5.out
    20  blast_formatter -archive ex5.out -outfmt 18 | less
    21  blast_formatter -archive ex5.out -outfmt 7 | less
    22  blast_formatter -archive ex5.out -outfmt 5 | less
    23  blast_formatter -archive ex5.out -outfmt 8 | less
    24  blast_formatter -archive ex5.out -outfmt 10 | less
    25  pwd
    26  wget https://yea4.us/451/data/pancetta
    27  cat pancetta
    28  blastp -db pdbaa -query pancetta
    29  blastp -db pdbaa -query pancetta -word_size 2 -comp_based_stats 0 -matrix PAM30 -gapopen 9 -gapextend 1 -evalue 200
[kevshaw@451]$