Tuesday, 10 November, 2020
[kevshaw@451]$ history
1 date
2 top
3 w
4 top
5 mkdir b
6 cd b
7 ls -l
8 wget https://yea4.us/451/data/ex5
9 ls
10 ls -l
11 cat ex5
12 time ls
13 time ls -l
14 ls -l
15 time blastp -db nr -query ex5 -outfmt 11 -out ex5.out
16 mv ex5.out ex5.out.bak
17 wget https://yea4.us/451/data/ex5.out
18 ls -l
19 less ex5.out
20 blast_formatter -archive ex5.out -outfmt 18 | less
21 blast_formatter -archive ex5.out -outfmt 0 | less
22 blast_formatter -help
23 blast_formatter -help | less
24 wget https://yea4.us/451/data/pancetta
25 cat pancetta
26 w
27 blastp -db pdbaa -query pancetta | less
28 blastp -db pdbaa -query pancetta -word_size 2 comp_based_stats 0 -matrix PAM30 -gapopen 9 -gapextend 1 -evalue 200 | less
29 blastp -db pdbaa -query pancetta -word_size 2 -comp_based_stats 0 -matrix PAM30 -gapopen 9 -gapextend 1 -evalue 200 | less
30 cd
[kevshaw@451]$