[kevshaw@451]$ history
     1  mkdir doc
     2  cd doc
     3  gfp -f 6im6
     4  grep '^ATOM.* A ' 6IM6.pdb > protein.pdb
     5  grep '^HETATM.* AH3 B ' > ligand.pdb
     6  grep '^HETATM.* AH3 B ' 6IM6.pdb > ligand.pdb
     7  ls
     8  less protein.pdb
     9  less ligand.pdb
    10  source /usr/local/bin/iwannadock
    11  prepare-receptor4 -r protein.pdb -A hydrogens -e True
    12  prepare-ligand4 -l ligand.pdb -A hydrogens -A bonds
    13  prepare-gpf4 -p spacing='0.375' -p gridcenter='81.925,158.633,29.175' -p npts='74,84,72' -r protein.pdbqt -l ligand.pdbqt
    14  ls -l
    15  less protein.gpf
    16  prepare-dpf4 -r protein.pdbqt -l ligand.pdbqt
    17  ls -l
    18  less ligand_protein.dpf
    19  autogrid4 -p ligand_protein.gpf
    20  autogrid4 -p protein.gpf
    21  ls -l
    22  autodock4 -p ligand_protein.dpf
    23  ls
    24  less ligand_protein.dlg
    25  adt
    26  cd
[kevshaw@451]$