[kevshaw@451]$ history
     1  top
     2  w
     3  top
     4  w
     5  cd blasting/
     6  ls
     7  top
     8  pwd
     9  ls
    10  cat ex2
    11  less ex2.out
    12  blast_formatter -archive ex2.out -outfmt 18 | less
    13  blast_formatter -archive ex2.out -outfmt 7 | less
    14  top
    15  blast_formatter -archive ex2.out -outfmt 3 | less
    16  blast_formatter -archive ex2.out -outfmt 4 | less
    17  blast_formatter -archive ex2.out -outfmt 6 | less
    18  blast_formatter -archive ex2.out -outfmt 1 | less
    19  wget https://yea4.us/451/data/ex3
    20  time blastp -db pdbaa -query ex3
    21  ls -al /u/blastdb/pdbaa.*
    22  time blastp -db pdbaa -query ex3
    23  time blastp -db pdbaa -query ex3 | less
    24  time blastp -db pdbaa -query ex3
    25  time blastp -db pdbaa -query ex3 -num_threads 6
    26  time blastp -db pdbaa -query ex3 -num_threads 32
    27  nano ex3
    28  time blastp -db pdbaa -query ex3 -num_threads 4
    29  time blastp -db pdbaa -query ex3 -num_threads 1
    30  top
    31  blastp -db pdbaa -query ex3 -num_threads 1
    32  time blastp -db pdbaa -query ex3 -num_threads 1 -word_size 2 -comp_based_stats 0 -matrix PAM30 -gapopen 9 -gapextend 1 -evalue 20000
    33  blastp -db pdbaa -query ex3 -num_threads 1 -word_size 2 -comp_based_stats 0 -matrix PAM30 -gapopen 9 -gapextend 1 -evalue 20000 | less
    34  blastp -db pdbaa -query ex3 -num_threads 1 -word_size 2 -comp_based_stats 0 -matrix PAM30 -gapopen 9 -gapextend 1 -evalue 200 | less
    35  nano pancetta
    36  cat pancetta
    37  blastp -db pdbaa -query pancetta | less
    38  blastp -db pdbaa -query pancetta -num_threads 1 -word_size 2 -comp_based_stats 0 -matrix PAM30 -gapopen 9 -gapextend 1 -evalue 200 | less
    39  blastp -db refseq -query pancetta -num_threads 1 -word_size 2 -comp_based_stats 0 -matrix PAM30 -gapopen 9 -gapextend 1 -evalue 200 | less
    40  blastp -db ref_seq -query pancetta -num_threads 1 -word_size 2 -comp_based_stats 0 -matrix PAM30 -gapopen 9 -gapextend 1 -evalue 200 | less
    41  blastp -db nr -query pancetta -num_threads 1 -word_size 2 -comp_based_stats 0 -matrix PAM30 -gapopen 9 -gapextend 1 -evalue 200 | less
    42  top
    43  cd
[kevshaw@451]$