Tuesday, 27 November, 2018
[kevshaw@451]$ history
1 w
2 ls
3 cd blast
4 ls
5 cd ..
6 cd blasting
7 ls
8 rm pickle
9 nano cytoc
10 ls
11 mv cytoc cytoc.fasta
12 less cytoc.fasta
13 clear
14 w
15 ls c*
16 cat cytoc.fasta
17 nice blastp -num_threads 6 -query cytoc.fasta -db nr
18 nice blastp -num_threads 6 -query cytoc.fasta -db nr | less
19 blastp -num_threads 6 -query cytoc.fasta -db nr -outfmt 11 -out cytoc.out
20 blast_formatter -archive cytoc.out -outfmt 1 | less
21 blast_formatter -archive cytoc.out -outfmt 2 | less
22 blast_formatter -archive cytoc.out -outfmt 3 | less
23 blast_formatter -archive cytoc.out -outfmt 5 | less
24 blast_formatter -archive cytoc.out -outfmt 4 | less
25 blast_formatter -archive cytoc.out -outfmt 6 | less
26 blast_formatter -archive cytoc.out -outfmt 7 | less
27 blast_formatter -archive cytoc.out -outfmt 7 | lesshistory
28 history
29 less cytoc.out
30 tail cytoc.out
31 less cytoc.out
32 blast_formatter -archive cytoc.out -outfmt 7 | less
33 blast_formatter -archive cytoc.out -outfmt "7 qacc" | less
34 blast_formatter -archive cytoc.out -outfmt "7 sacc" | less
35 blast_formatter -archive cytoc.out -outfmt "7 qacc sacc evalue " | less
36 blast_formatter -archive cytoc.out -outfmt 7 | less
37 blast_formatter -archive cytoc.out -outfmt 10 | less
38 blast_formatter -archive cytoc.out -outfmt 12 | less
39 blast_formatter -archive cytoc.out -outfmt 13 | less
40 blast_formatter -archive cytoc.out -outfmt 14 | less
41 blast_formatter -archive cytoc.out -outfmt 15 | less
42 blast_formatter -archive cytoc.out -outfmt 5 | less
43 cd /u/blastdb/
44 df -k
45 ls
46 ls -al | less
47 nano ourdb.fasta
48 cd
49 cd blasting/
50 ls
51 less ourdb.fasta
52 formatblastdb -db ourdb -dbtype nucl -in ourdb.fasta -parse_seqids
53 makeblastdb -db ourdb -dbtype nucl -in ourdb.fasta -parse_seqids
54 makeblastdb -out ourdb -dbtype nucl -in ourdb.fasta -parse_seqids
55 nano gene.fasta
56 blastn -db ourdb -queary gene.fasta
57 blastn -db ourdb -query gene.fasta
58 less ourdb.fasta
59 nano gene.fasta
60 blastn -db ourdb -query gene.fasta
[kevshaw@451]$