[kevshaw@451]$ history
     1  w
     2  mkdir no
     3  mkdir mt
     4  cd mt
     5  mesg n
     6  clear
     7  gfp -f 2aai
     8  ls
     9  molauto 2AAI.pdb > 2AAI.mol
    10  molsort 2AAI.mol > 2aai.ms; rm 2AAI.mol
    11  nano 2aai.ms
    12  grep "A[0-9]" 2aai.ms
    13  grep "B[0-9]" 2aai.ms
    14  head -7 2aai.ms
    15  head -9 2aai.ms
    16  head -11 2aai.ms
    17  head -11 2aai.ms > tmp
    18  grep "A[0-9]" 2aai.ms >> tmp
    19  cat tmp
    20  grep "B[0-9]" 2aai.ms >> tmp
    21  mv tmp 2aai.ms
    22  nano 2aai.ms
    23  naccess 2AAI.pdb
    24  less 2AAI.rsa
    25  gfp -cf 2AAIA
    26  gfp -cf 2AAIB
    27  ls
    28  naccess 2AAIA.pdb
    29  naccess 2AAIB.pdb
    30  tail -1 2AAI.rsa ; tail -1 2AAIA.rsa ; tail -1 2AAIB.rsa
    31  bc
    32  ls
    33  grep SEQRES 2AAI.pdb
    34  grep "SEQRES.* A [0-9]" 2AAI.pdb
    35  grep "SEQRES.* A [0-9]" 2AAI.pdb
    36  grep "SEQRES.* A [0-9]" 2AAI.pdb | cut -c20-70
    37  grep "SEQRES.* A [0-9]" 2AAI.pdb | cut -c20-70 | tr " " "\n"
    38  grep "SEQRES.* A [0-9]" 2AAI.pdb | cut -c20-70 | tr " " "\n" | grep ALA
    39  grep "SEQRES.* A [0-9]" 2AAI.pdb | cut -c20-70 | tr " " "\n" | grep ALA | wc -l
    40  echo 'grep "SEQRES.* A [0-9]" 2AAI.pdb | cut -c20-70 | tr " " "\n" | grep ALA | wc -l' > avsl
    41  nano avsl
    42  chmod x avsl
    43  ./avsl 2AAI.pdb
    44  find pdbs/ -name "*.pdb"
    45  find pdbs/ -name "*.pdb" | xargs -l ./avsl
    46  nano avsl
    47  find pdbs/ -name "*.pdb" | xargs -l ./avsl > tmp
    48  less tmp
    49  cd ..
    50  mkdir good
    51  cd good
    52  wget http://dunbrack.fccc.edu/Guoli/culledpdb_hh/cullpdb_pc20_res1.6_R0.25_d181004_chains3374.gz
    53  gzip -d cullpdb_pc20_res1.6_R0.25_d181004_chains3374.gz
    54  less
    55  less cullpdb_pc20_res1.6_R0.25_d181004_chains3374
    56  cat cullpdb_pc20_res1.6_R0.25_d181004_chains3374 | cut -c1-5
    57  cat cullpdb_pc20_res1.6_R0.25_d181004_chains3374 | cut -c1-5 | xargs -l -P 8 gfp -fc
[kevshaw@451]$