Tuesday, 30 September, 2025
[kevshaw@451]$ history
1 mkdir ps2
2 cd ps2
3 gfp -f 2lzm
4 ls
5 nano bythermal
6 ls
7 ls -l
8 chmod x bythermal
9 ls -l
10 grep ^ATOM 2LZM.pdb | less
11 grep ^ATOM 2LZM.pdb | cut -k11
12 grep ^ATOM 2LZM.pdb | cut -c60-67
13 grep ^ATOM 2LZM.pdb | cut -c62-66
14 grep ^ATOM 2LZM.pdb | less
15 grep ^ATOM 2LZM.pdb | cut -c62-66
16 grep ^ATOM 2LZM.pdb | cut -c62-66 | sort -n | head -1
17 grep ^ATOM 2LZM.pdb | cut -c62-66 | sort -n | tail -1
18 ./bythermal min=1.84 max=70.64 2LZM.pdb
19 ./bythermal min=1.84 max=70.64 2LZM.pdb > 2lzm.ms
20 ls -l
21 molscript < 2lzm.ms > 2lzm.ps
22 grep ^ATOM 2LZM.pdb | cut -c62-66 | sort -n | head -1
23 grep ^ATOM 2LZM.pdb | cut -c62-66 | sort -n | tail -1
24 ls
25 convert 2lzm.ps 2lzm.jpg
26 molscript -r < 2lzm.ms > 2lzm.r3d
27 ls -l
28 nano 2lzm.r3d
29 render -tiff 2lzm.tif < 2lzm.r3d
30 ls -l
31 convert 2lzm.tif 2lzm.jpg
32 gfp -f 1crn
33 molauto 1CRN.pdb
34 molauto 1CRN.pdb | molsort
35 molauto 1CRN.pdb | molsort > 1crn.ms
36 cat 1crn.ms
37 nano 1crn.ms
38 ls
39 naccess 2LZM.pdb
40 ls 2*
41 ls -l 2*
42 less 2LZM.log
43 less 2LZM.asa
44 less 2LZM.rsa
45 cd
46 mkdir ps3
47 wget https://homepages.thm.de/~hg12640/2017-11-18.pdbsel
48 less 2017-11-18.pdbsel
49 grep '^ ' | cut -c9-13
50 grep '^ ' 2017-11-18.pdbsel | cut -c9-13
51 grep '^ ' 2017-11-18.pdbsel
52 grep '^ ' 2017-11-18.pdbsel | cut -c9-13
53 grep '^ ' 2017-11-18.pdbsel | cut -c9-13 | head -10
54 ls
55 mv 2017-11-18.pdbsel ps3
56 cd ps3
57 ls
58 grep '^ ' 2017-11-18.pdbsel | cut -c9-13 | head -10 | gfp -fc
59 ls
60 ls *.pdb | wc -l
61 less 5D8VA.pdb
62 cd
[kevshaw@451]$